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2018

10: Gatto L, Breckels LM, Lilley KS. Assessing sub-cellular resolution in spatial proteomics experiments. Curr Opin Chem Biol. 2019 Feb;48:123-149. doi: 10.1016/j.cbpa.2018.11.015. Epub 2018 Dec 14. Review. PubMed PMID: 30711721; PubMed Central PMCID: PMC6391913.

11: Nightingale DJ, Geladaki A, Breckels LM, Oliver SG, Lilley KS. The subcellular organisation of Saccharomyces cerevisiae. Curr Opin Chem Biol. 2019 Feb;48:86-95. doi: 10.1016/j.cbpa.2018.10.026. Epub 2018 Nov 29. Review. PubMed PMID: 30503867; PubMed Central PMCID: PMC6391909.

12: Queiroz RML, Smith T, Villanueva E, Marti-Solano M, Monti M, Pizzinga M, Mirea DM, Ramakrishna M, Harvey RF, Dezi V, Thomas GH, Willis AE, Lilley KS. Comprehensive identification of RNA-protein interactions in any organism using orthogonal organic phase separation (OOPS). Nat Biotechnol. 2019 Feb;37(2):169-178. doi: 10.1038/s41587-018-0001-2. Epub 2019 Jan 3. Erratum in: Nat Biotechnol. 2019 Jun;37(6):692. PubMed PMID: 30607034; PubMed Central PMCID: PMC6591131.

13: Geladaki A, Kočevar Britovšek N, Breckels LM, Smith TS, Vennard OL, Mulvey CM, Crook OM, Gatto L, Lilley KS. Combining LOPIT with differential ultracentrifugation for high-resolution spatial proteomics. Nat Commun. 2019 Jan 18;10(1):331. doi: 10.1038/s41467-018-08191-w. PubMed PMID: 30659192; PubMed Central PMCID: PMC6338729.

14: Repici M, Hassanjani M, Maddison DC, Garção P, Cimini S, Patel B, Szegö ÉM, Straatman KR, Lilley KS, Borsello T, Outeiro TF, Panman L, Giorgini F. The Parkinson's Disease-Linked Protein DJ-1 Associates with Cytoplasmic mRNP Granules During Stress and Neurodegeneration. Mol Neurobiol. 2019 Jan;56(1):61-77. doi: 10.1007/s12035-018-1084-y. Epub 2018 Apr 19. PubMed PMID: 29675578; PubMed Central PMCID: PMC6334738.

15: Hurrell T, Lilley KS, Cromarty AD. Proteomic responses of HepG2 cell monolayers and 3D spheroids to selected hepatotoxins. Toxicol Lett. 2019 Jan;300:40-50. doi: 10.1016/j.toxlet.2018.10.030. Epub 2018 Oct 28. PubMed PMID: 30381255.

16: Crook OM, Mulvey CM, Kirk PDW, Lilley KS, Gatto L. A Bayesian mixture modelling approach for spatial proteomics. PLoS Comput Biol. 2018 Nov 27;14(11):e1006516. doi: 10.1371/journal.pcbi.1006516. eCollection 2018 Nov. PubMed PMID: 30481170; PubMed Central PMCID: PMC6258510.

17: Piñeiro D, Stoneley M, Ramakrishna M, Alexandrova J, Dezi V, Juke-Jones R, Lilley KS, Cain K, Willis AE. Identification of the RNA polymerase I-RNA interactome. Nucleic Acids Res. 2018 Nov 16;46(20):11002-11013. doi: 10.1093/nar/gky779. PubMed PMID: 30169671; PubMed Central PMCID: PMC6237751.

18: Mata CI, Fabre B, Parsons HT, Hertog MLATM, Van Raemdonck G, Baggerman G, Van de Poel B, Lilley KS, Nicolaï BM. Ethylene Receptors, CTRs and EIN2 Target Protein Identification and Quantification Through Parallel Reaction Monitoring During Tomato Fruit Ripening. Front Plant Sci. 2018 Nov 8;9:1626. doi: 10.3389/fpls.2018.01626. eCollection 2018. PubMed PMID: 30467512; PubMed Central PMCID: PMC6235968.

19: Alqurashi M, Chiapello M, Bianchet C, Paolocci F, Lilley KS, Gehring C. Early Responses to Severe Drought Stress in the Arabidopsis thaliana Cell Suspension Culture Proteome. Proteomes. 2018 Oct 2;6(4). pii: E38. doi: 10.3390/proteomes6040038. PubMed PMID: 30279377; PubMed Central PMCID: PMC6313886.

20: Nett IR, Mulas C, Gatto L, Lilley KS, Smith A. Negative feedback via RSK modulates Erk-dependent progression from naïve pluripotency. EMBO Rep. 2018 Aug;19(8). pii: e45642. doi: 10.15252/embr.201745642. Epub 2018 Jun 12. PubMed PMID: 29895711; PubMed Central PMCID: PMC6073214.

21: Parsons HT, Lilley KS. Mass spectrometry approaches to study plant endomembrane trafficking. Semin Cell Dev Biol. 2018 Aug;80:123-132. doi: 10.1016/j.semcdb.2017.10.014. Epub 2017 Nov 13. Review. PubMed PMID: 29042236.

22: Jedrey H, Lilley KS, Welch M. Ciprofloxacin binding to GyrA causes global changes in the proteome of Pseudomonas aeruginosa. FEMS Microbiol Lett. 2018 Jul 1;365(13). doi: 10.1093/femsle/fny134. PubMed PMID: 29846552; PubMed Central PMCID: PMC5995189.

23: Hurrell T, Segeritz CP, Vallier L, Lilley KS, Cromarty AD. Proteomic Comparison of Various Hepatic Cell Cultures for Preclinical Safety Pharmacology. Toxicol Sci. 2018 Jul 1;164(1):229-239. doi: 10.1093/toxsci/kfy084. PubMed PMID: 29635369.

24: Armean IM, Lilley KS, Trotter MWB, Pilkington NCV, Holden SB. Co-complex protein membership evaluation using Maximum Entropy on GO ontology and InterPro annotation. Bioinformatics. 2018 Jun 1;34(11):1884-1892. doi: 10.1093/bioinformatics/btx803. PubMed PMID: 29390084; PubMed Central PMCID: PMC5972588.

25: Zhang H, Gannon L, Hassall KL, Deery MJ, Gibbs DJ, Holdsworth MJ, van der Hoorn RAL, Lilley KS, Theodoulou FL. N-terminomics reveals control of Arabidopsis seed storage proteins and proteases by the Arg/N-end rule pathway. New Phytol. 2018 May;218(3):1106-1126. doi: 10.1111/nph.14909. Epub 2017 Nov 23. PubMed PMID: 29168982; PubMed Central PMCID: PMC5947142.

26: Harvey RF, Smith TS, Mulroney T, Queiroz RML, Pizzinga M, Dezi V, Villenueva E, Ramakrishna M, Lilley KS, Willis AE. Trans-acting translational regulatory RNA binding proteins. Wiley Interdiscip Rev RNA. 2018 May;9(3):e1465. doi: 10.1002/wrna.1465. Epub 2018 Jan 17. Review. PubMed PMID: 29341429; PubMed Central PMCID: PMC5947564.

27: Lloyd-Lewis B, Krueger CC, Sargeant TJ, D'Angelo ME, Deery MJ, Feret R, Howard JA, Lilley KS, Watson CJ. Stat3-mediated alterations in lysosomal membrane protein composition. J Biol Chem. 2018 Mar 23;293(12):4244-4261. doi: 10.1074/jbc.RA118.001777. Epub 2018 Jan 17. PubMed PMID: 29343516; PubMed Central PMCID: PMC5868265.