Pipeline to assess the greatest source of technical variance in quantitative proteomics using metabolic labelling. Russell MR, Lilley KS. J Proteomics. 2012
Popular computational methods to assess multi-protein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments. Armean IM, Lilley KS, Trotter MW. Mol Cell Proteomics. 2012
Putative glycosyltransferases and other plant golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, Rubtsov D, Segura MP, Miles GP, Stevens TJ, Dunkley TP, Munro S, Lilley KS, Dupree P. Plant Physiol. 2012
MRMaid 2.0: mining PRIDE for evidence-based SRM transitions. Fan J, Mohareb F, Bond NJ, Lilley KS, Bessant C. OMICS 2012
Isobaric tagging approaches in quantitative proteomics: the ups and downs. Christoforou AL, Lilley KS. Anal Bioanal Chem. 2012
Evaluation and properties of the budding yeast phosphoproteome. Amoutzias GD, He Y, Lilley KS, Van de Peer Y, Oliver SG. Mol Cell Proteomics. 2012
MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation. Gatto L, Lilley KS Bioinformatics. 2012 Jan 15;28(2):288-9. Epub 2011 Nov 22.