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2013

Gatto L. and Christoforou A. Using R and Bioconductor for proteomics data analysis, Biochim Biophys Acta - Proteins and Proteomics, 2013 http://dx.doi.org/10.1016/j.bbapap.2013.04.032.

Wilf NM, et al RNA-seq reveals the RNA binding proteins, Hfq and RsmA, play various roles in virulence, antibiotic production and genomic flux in Serratia sp. ATCC 39006. BMC Genomics. 14:822. doi: 10.1186/1471-2164-14-822.(2013)

King HA, Cobbold LC, Pichon X, Pöyry T, Wilson LA, Booden H, Jukes-Jones R, Cain K, Lilley KS, Bushell M, Willis AE.Remodelling of a polypyrimidine tract-binding protein complex during apoptosis activates cellular IRESs. Cell Death Differ. 21(1):161-71. doi: 10.1038/cdd.2013.135. (2013)

Hemsley PA, Weimar T, Lilley K, Dupree P, Grierson C. Palmitoylation in plants: new insights through proteomics. Plant Signal Behav. 8(8). pii: e25209. doi: 10.4161/psb.25209. (2013).

Chouchani ET, Methner C, Nadtochiy SM, Logan A, Pell VR, Ding S, James AM, Cochemé HM, Reinhold J, Lilley KS, Partridge L, Fearnley IM, Robinson AJ, Hartley RC, Smith RA, Krieg T, Brookes PS, Murphy MP. Cardioprotection by S-nitrosation of a cysteine switch on mitochondrial complex I. Nature  Med. 19(6):753-9. doi: 10.1038/nm.3212. (2013).

Breckels LM, Gatto L, Christoforou A, Groen AJ, Lilley KS, Trotter MW. The effect of organelle discovery upon sub-cellular protein localisation. J Proteomics. 88:129-40. doi: 10.1016/j.jprot.2013.02.019. (2013).

Shliaha PV, Bond NJ, Gatto L, Lilley KS. Effects of traveling wave ion mobility separation on data independent acquisition in proteomics studies. J Proteome Res. 12(6):2323-39. doi: 10.1021/pr300775k. (2013).

Bond NJ, Shliaha PV, Lilley KS, Gatto L. Improving qualitative and quantitative performance for MS(E)-based label-free proteomics.J Proteome Res. 12(6):2340-53. doi: 10.1021/pr300776t. (2013)

Ivanov AR, Colangelo CM, Dufresne CP, Friedman DB, Lilley KS, Mechtler K, Phinney BS, Rose KL, Rudnick PA, Searle BC, Shaffer SA, Weintraub ST. Interlaboratory studies and initiatives developing standards for proteomics. Proteomics. 13(6):904-9. doi: 10.1002/pmic.201200532. (2013)

Marondedze C, Turek I, Parrott B, Thomas L, Jankovic B, Lilley KS, Gehring C. Structural and functional characteristics of cGMP-dependent methionine oxidation in Arabidopsis thaliana proteins. Cell Commun Signal. 11(1):1. doi: 10.1186/1478-811X-11-1.(2013)

Vowinckel J, Capuano F, Campbell K, Deery MJ, Lilley KS, Ralser M. The beauty of being (label)-free: sample preparation methods for SWATH-MS and next-generation targeted proteomics. F1000Res. 2:272. doi: 10.12688/f1000research.2-272.v2. eCollection (2013).

Hemsley PA, Weimar T, Lilley KS, Dupree P, Grierson C A proteomic approach identifies many novel palmitoylated proteins in Arabidopsis. New Phytol. 197(3):805-14. doi: 10.1111/nph.12077. (2013)