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Core Facility Recent Publications List

Core Facility Publications list 2017


C.I. Mata, B. Fabre, M. Hertog1, H.T. Parsons, M.J. Deery, K.S. Lilley, B.M. Nicolaï, “In depth characterization of the tomato fruit pericarp proteome”, Proteomics 17(1-2) (2017).


C.M. Mulvey, L.M. Breckels, A. Geladaki, N. Kočevar Britovšek, D.J.H. Nightingale, A. Christoforou, M. Elzek, M.J. Deery, L. Gatto, K.S. Lilley, “Using HyperLOPIT to perform high resolution mapping of the spatial proteome”, Nat. Prot. 12, 1110-1135 (2017).


P. Thornton , J. Sevalle , M.J. Deery , G. Fraser , Y. Zhou , S. Ståhl , E.H. Franssen , R.B. Dodd , S. Qamar , B. Perez-Nievas , L.S.C Nicol , S. Eketjäll , J. Revell , C. Jones , A. Billinton , P. St George-Hyslop , I. Chessell, D.C. Crowther, “TREM2 shedding by cleavage at the H157-S158 bond is accelerated for the Alzheimer's disease-associated H157Y variant”, EMBO Mol. Med. 9(10):1366-1378 (2017).


B. Fabre, D. Korona, C. Mata-Martinez, M.J. Deery, B.M. Nicolaï, S. Russell, K.S. Lilley, “Spectral libraries for SWATH-MS assays for Drosophila melanogaster and Solanum Lycopersicum”, Proteomics 17(21) (2017).


B.Y-W. Chung, T. Hardcastle, M.J. Deery, A Groen, J. Howard, B. Santos, D. Baulcombe, “Messenger RNA destabilization through CDS-targeting is the primary role of miRNA in the unicellular green alga Chlamydomonas reinhardtii”, Nat. Plants (10):787-794 (2017).


R. Hennell James, E. Caceres, A. Escasinas, H. Alhasan, J. Howard, M.J. Deery, T. Ettema, N. Robinson, “Functional reconstruction of a eukaryotic-like E1/E2/(RING)E3 ubiquitylation cascade from an uncultured archaeon”, Nat. Comm. 8(1):1120 (2017).


N. Martínez-Sáez,S. Sun,D. Oldrini,P. Sormanni, O. Boutureira, F. Carboni, Ismael Compañón,M.J. Deery,M. Vendruscolo,F. Corzana,R. Adamo, G.J.L. Bernardes, “Oxetene grafts site-selectively on native disulphides enhance protein stability and activity in vivo”, Angew. Chem. 56(47):14963-14967 (2017).


H. Partsons, C. Hooper, T. Stevens, A. Saukkonen, I. Castleden, P. Singh, G. Mann,  B. Fabre, J. Ito, M.J. Deery, K.S. Lilley, C. Petzold, Christopher; A.H. Millar, J. Heazlewood, “Multiple Marker Abundance Profiling: combining selected reaction monitoring and data-dependent acquisition for rapid estimation of organelle abundance in subcellular samples”, Plant J. (2017).


H. Zhang, L. Gannon, K.L. Hassall, M.J. Deery, D.J. Gibbs, M. J. Holdsworth, R.A.L. van der Hoorn, K.S. Lilley, F.L. Theodoulou, “N-terminomics reveals control of Arabidopsis seed storage proteins and proteases by the Arg/N-end rule pathway”, New Phytol. (2017).


K. Weckmann, M.J. Deery, J.A. Howard, R. Feret, J.M., Asara, F. Dethloff, M.D. Filou, J. Iannace, C. Labermaier, G. Maccarrone, C. Webhofer, L. Teplytska, K’ Lilley, MB Muller, C.W. Turck, “Ketamine's antidepressant effect is mediated by energy metabolism and antioxidant defense system”, Sci. Rep. 7(1):15788 (2017).