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Core Facility Recent Publications List

Core Facility Publications list 2017/2018


K. Weckmann, M.J. Deery, J.A. Howard, R. Feret, J.M. Asara, F. Dethloff, M.D. Filiou, C. Labermaier, G.Maccarrone, K.S. Lilley, M. Mueller, C.W. Turck, Ketamine’s Effects on the Glutamatergic and GABAergic Systems: A Proteomics and Metabolomics Study in Mice”, Mol Neuropsychiatry DOI:10.1159/000493425 (2018).


K. Agboh, C.H.F. Lau, Y.S.K. Khoo, H. Singh, S. Raturi, A.V. Nair, J. Howard, M. Chiapello, R. Feret, M.J. Deery, S. Murakami, H.W. van Veen, “Powering the ABC multidrug exporter LmrA: how nucleotides embrace the ion-motive force”, Science Advances 4(9) (2018).


H. Zhang, L. Gannon, K.L. Hassall, M.J. Deery, D.J. Gibbs, M. J. Holdsworth, R.A.L. van der Hoorn, K.S. Lilley, F.L. Theodoulou, “N-terminomics reveals control of Arabidopsis seed storage proteins and proteases by the Arg/N-end rule pathway”, New Phytol. 218(3):1106-1126 (2018).


M. Matos, B. Oliveira, N. Martínez-Sáez, A. Guerreiro, P.M.S.D. Cal, J. Bertoldo, M. Maneiro, E. Perkins, J. Howard,  M.J. Deery, J.M. Chalker, F. Corzana,  G. Jiménez-Osés, G.J.L. Bernardes, “Chemo and regioselective lysine modification on native proteins”, J. Am. Chem. Soc. 140(11):4004-4017 (2018).


B. Lloyd-Lewis, C. Krueger, T. Sargeant, M. D'Angelo, M. J. Deery, R. Feret, J. Howard, K. S. Lilley, C. Watson "Stat3 mediated alterations in lysosomal membrane protein composition", J. Biol Chem. 293(12):4244-4261, (2018).


K. Weckmann, M.J. Deery, J.A. Howard, R. Feret, J.M., Asara, F. Dethloff, M.D. Filou, J. Iannace, C. Labermaier, G. Maccarrone, C. Webhofer, L. Teplytska, K. Lilley, MB Muller, C.W. Turck, “Ketamine's antidepressant effect is mediated by energy metabolism and antioxidant defense system”, Sci. Rep, 7(1):15788 (2017).


H. Parsons, C. Hooper, T. Stevens, A. Saukkonen, I. Castleden, P. Singh, G. Mann,  B. Fabre, J. Ito, M.J. Deery, K.S. Lilley, C. Petzold, Christopher; A.H. Millar, J. Heazlewood, “Multiple Marker Abundance Profiling: combining selected reaction monitoring and data-dependent acquisition for rapid estimation of organelle abundance in subcellular samples”, The Plant Journal, 92(6):1202-1217 (2017).


N. Martínez-Sáez,S. Sun,D. Oldrini,P. Sormanni, O. Boutureira, F. Carboni, Ismael Compañón,M. J. Deery,M. Vendruscolo,F. Corzana,R. Adamo, G. J. L. Bernardes, “Oxetene grafts site-selectively on native disulphides enhance protein stability and activity in vivo”, Angew. Chem., 56(47):14963-14967 (2017).


R. Hennell James, E. Caceres, A. Escasinas, H. Alhasan, J. Howard, M. J. Deery, T. Ettema, N. Robinson, “Functional reconstruction of a eukaryotic-like E1/E2/(RING)E3 ubiquitylation cascade from an uncultured archaeon”, Nat. Comm., 8(1):1120 (2017).


B. Y-W. Chung, T. Hardcastle, M. J. Deery, A Groen, J. Howard, B. Santos, D. Baulcombe, “Messenger RNA destabilization through CDS-targeting is the primary role of miRNA in the unicellular green alga Chlamydomonas reinhardtii”, Nat. Plants (10):787-794 (2017).


B. Fabre, D. Korona, C. Mata-Martinez, M. J. Deery, B. M. Nicolaï, S. Russell, Kathryn S. Lilley, “Spectral libraries for SWATH-MS assays for Drosophila melanogaster and Solanum Lycopersicum”, Proteomics, 17(21) (2017).


P. Thornton, J. Sevalle, M. J. Deery, G. Fraser, Y. Zhou, S. Ståhl, E. H. Franssen, R. B. Dodd, S. Qamar, B. Perez-Nievas, L. S. C Nicol, S. Eketjäll, J. Revell, C. Jones, A. Billinton, P. St George-Hyslop, I. Chessell, D. C. Crowther, “TREM2 shedding by cleavage at the H157-S158 bond is accelerated for the Alzheimer's disease-associated H157Y variant”, EMBO Mol. Med. 9(10):1366-1378 (2017).


C. M. Mulvey, L. M. Breckels, A. Geladaki, N. Kočevar Britovšek, D. J.H. Nightingale, A. Christoforou, M. Elzek, M. J. Deery, L. Gatto, K. S. Lilley, “Using HyperLOPIT to perform high resolution mapping of the spatial proteome”, Nature Prot., 12, 1110-1135 (2017).


C. I. Mata, B. Fabre, M. Hertog1, H.T. Parsons, M. J. Deery, K. S. Lilley, B. M. Nicolaï, “In depth characterization of the tomato fruit pericarp proteome”, Proteomics 17(1-2) (2017).