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Lowe N, et al UK Drosophila Protein Trap Screening Consortium, Lilley KS, Russell S, St Johnston D. Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library. Development 141(20):3994-4005. doi: 10.1242/dev.111054. (2014)

Nikolovski N, Shliaha PV, Gatto L, Dupree P, Lilley KS. Label-free protein quantification for plant Golgi protein localization and abundance. Plant Physiol. 166(2):1033-43. doi: 10.1104/pp.114.245589. (2014).

Tomizioli M, Lazar C, Brugière S, Burger T, Salvi D, Gatto L, Moyet L, Breckels LM, Hesse AM, Lilley KS, Seigneurin-Berny D, Finazzi G, Rolland N, Ferro M. Deciphering thylakoid sub-compartments using a mass spectrometry-based approach. Mol Cell Proteomics.13(8):2147-67. doi: 10.1074/mcp.M114.040923. (2014)

Shliaha PV, Jukes-Jones R, Christoforou A, Fox J, Hughes C, Langridge J, Cain K, Lilley KS. Additional precursor purification in isobaric mass tagging experiments by traveling wave ion mobility separation (TWIMS) J Proteome Res. 13(7):3360-9. doi: 10.1021/pr500220g. (2014).

Gatto L, Breckels LM, Burger T, Nightingale DJ, Groen AJ, Campbell C, Nikolovski N, Mulvey CM, Christoforou A, Ferro M, Lilley KS  A foundation for reliable spatial proteomics data analysis. Mol Cell Proteomics. 13(8):1937-52. doi: 10.1074/mcp.M113.036350.(2014)

Christoforou A, Arias AM, Lilley KS. Determining protein subcellular localization in mammalian cell culture with biochemical fractionation and iTRAQ 8-plex quantification. Methods Mol Biol. 1156:157-74. doi: 10.1007/978-1-4939-0685-7_10.(2014)

Walzer M, et al. qcML: an exchange format for quality control metrics from mass spectrometry experiments. Mol Cell Proteomics. 13(8):1905-13. doi: 10.1074/mcp.M113.035907. (2014).

Elliott TS, Townsley FM, Bianco A, Ernst RJ, Sachdeva A, Elsässer SJ, Davis L, Lang K, Pisa R, Greiss S, Lilley KS, Chin JW. Proteome labeling and protein identification in specific tissues and at specific developmental stages in an animal. Nature Biotechnol. 32(5):465-72. doi: 10.1038/nbt.2860. (2014)

Li XW, Rees JS, Xue P, Zhang H, Hamaia SW, Sanderson B, Funk PE, Farndale RW, Lilley KS, Perrett S, Jackson AP New insights into the DT40 B cell receptor cluster using a proteomic proximity labeling assay J Biol Chem.;289(21):14434-47. doi: 10.1074/jbc.M113.529578. (2014).

Hiemstra TF, Charles PD, Gracia T, Hester SS, Gatto L, Al-Lamki R, Floto RA, Su Y, Skepper JN, Lilley KS, Karet Frankl FE Human urinary exosomes as innate immune effectors. J Am Soc Nephrol. 25(9):2017-27. doi: 10.1681/ASN.2013101066. (2014).

Wang Y, Lilley KS, Oliver SG A protocol for the subcellular fractionation of Saccharomyces cerevisiae using nitrogen cavitation and density gradient centrifugation. Yeast. 31(4):127-35. doi: 10.1002/yea.3002. (2014)

Dynamic regulation of the COP9 signalosome in response to DNA damage. Füzesi-Levi MG, Ben-Nissan G, Bianchi E, Zhou H, Deery MJ, Lilley KS, Levin Y, Sharon M. Mol Cell Biol. 34(6):1066-76. doi: 10.1128/MCB.01598-13. (2014)

Gatto L, Breckels LM, Wieczorek S, Burger T, Lilley KS Mass-spectrometry-based spatial proteomics data analysis using pRoloc and pRolocdata. Bioinformatics. 30(9):1322-4. doi: 10.1093/bioinformatics/btu013. (2014).

Groen AJ, Sancho-Andrés G, Breckels LM, Gatto L, Aniento F, Lilley KS. Identification of trans-golgi network proteins in Arabidopsis thaliana root tissue. J Proteome Res. 13(2):763-76. doi: 10.1021/pr4008464. (2014)

Gillingham AK, Sinka R, Torres IL, Lilley KS, Munro S.Toward a comprehensive map of the effectors of rab GTPases. Developmental Cell. 2014 Nov 10;31(3):358-73. doi: 10.1016/j.devcel.2014.10.007. Epub 2014 Nov 10.